SMTL ID : 8k53.1

Structure of the Dimeric Human CNTN2 Ig 1-6-FNIII 1-2 Domain in an Asymmetric State

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: N.431, T.436, V.437, T.438, P.439 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.438

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 1 residues within 4Å: Chain A: N.468 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain B: N.431, T.436, P.439 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:P.439 NAG-NAG.4: 2 residues within 4Å: Chain B: F.459, N.468 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain A: M.45, N.46, A.76 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.46 NAG.6: 1 residues within 4Å: Chain A: N.447 No protein-ligand interaction detected (PLIP) NAG.7: 3 residues within 4Å: Chain B: M.45, N.46, Q.74 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.46, B:Q.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z.Z. et al., Structure of human CNTN2 immunoglobulin domains 1-6 homo-dimer. To Be Published

Release Date

2023-12-06

Peptides

Contactin-2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Contactin-2