SMTL ID : 8k5q.1

Crystal structure of YajQ STM0435 with c-di-GMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

monomer

Ligands

2 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-covalent)

C2E.1: 5 residues within 4Å: Chain A: K.135, S.136, R.137, D.138, D.163 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.137, A:R.137, A:R.137, A:D.138, A:D.138 Water bridges: A:R.137, A:D.163 Salt bridges: A:R.137, A:D.163 C2E.2: 2 residues within 4Å: Chain A: R.33, G.34 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.33, A:R.33 Salt bridges: A:R.33 pi-Cation interactions: A:R.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dai , Y. et al., A c-di-GMP binding effector STM0435 modulates flagellar motility and pathogenicity in Salmonella. Virulence (2024)

Release Date

2024-04-17

Peptides

YajQ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

YajQ

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