SMTL ID : 8k5s.1

The structure of EntE with 3-(prop-2-yn-1-yloxy)benzoic acid sulfamoyl adenosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-dimer

Ligands

2 x VPT: [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-(3-prop-2-ynoxyphenyl)carbonylsulfamate(Non-covalent)

VPT.1: 20 residues within 4Å: Chain A: Q.188, H.234, G.235, Y.236, S.240, G.308, G.309, A.310, R.311, V.331, F.332, G.333, M.334, A.335, V.339, Q.355, D.415, V.427, K.432, K.441 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.236, A:V.331, A:A.335 Hydrogen bonds: A:G.191, A:S.240, A:G.309, A:V.331, A:G.333, A:A.335, A:D.415, A:K.432, A:K.441 Salt bridges: A:H.234, A:K.441 pi-Stacking: A:F.332 VPT.2: 21 residues within 4Å: Chain B: Q.188, H.234, G.235, Y.236, S.240, G.308, G.309, A.310, R.311, V.331, F.332, G.333, M.334, A.335, V.339, Q.355, D.415, V.427, K.432, N.436, K.441 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:Y.236, B:V.331, B:A.335 Hydrogen bonds: B:G.191, B:S.240, B:G.309, B:V.331, B:G.333, B:A.335, B:D.415, B:K.432, B:K.441 Salt bridges: B:H.234, B:K.441

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ishikawa, F. et al., Biosynthetic Incorporation of Non-native Aryl Acid Building Blocks into Peptide Products Using Engineered Adenylation Domains. Acs Chem.Biol. (2024)

Release Date

2024-07-31

Peptides

Enterobactin synthase component E: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Enterobactin synthase component E

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