SMTL ID : 8k62.1

Crystal structure of ALKBH1 and 13h complex.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.231, D.233, H.287 Ligands: IAU.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.231, A:D.233, A:H.287, H2O.1

1 x IAU: 1-[5-[[3-(trifluoromethyloxy)phenyl]methoxy]pyrimidin-2-yl]pyrazole-4-carboxylic acid(Non-covalent)

IAU.2: 22 residues within 4Å: Chain A: W.170, T.172, Y.177, W.179, Y.184, I.218, N.220, Y.222, L.228, H.231, D.233, S.245, F.254, M.270, H.287, V.289, R.338, N.340, T.342, F.353, P.354 Ligands: MN.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.177, A:I.218, A:L.228, A:F.353, A:F.353 Hydrogen bonds: A:N.220, A:Y.222, A:S.245 Water bridges: A:N.340 Salt bridges: A:R.338

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiong, L. et al., Discovery of a Potent and Cell-Active Inhibitor of DNA 6mA Demethylase ALKBH1. J.Am.Chem.Soc. (2024)

Release Date

2024-07-31

Peptides

Nucleic acid dioxygenase ALKBH1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nucleic acid dioxygenase ALKBH1

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