SMTL ID : 8k6d.1

Crystal structure of SARS-CoV-2 3CLpro M49K/S301P mutant in complex with WU-04

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x J7R: ~{N}-[(1~{S},2~{R})-2-[[4-bromanyl-2-(methylcarbamoyl)-6-nitro-phenyl]amino]cyclohexyl]isoquinoline-4-carboxamide(Non-covalent)

J7R.1: 17 residues within 4Å: Chain A: H.41, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, D.187, R.188, Q.189, T.190, Q.192 Chain B: S.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:N.142, A:M.165, A:E.166 Hydrogen bonds: A:G.143, A:H.164, A:E.166, A:R.188 Halogen bonds: A:T.190 J7R.2: 17 residues within 4Å: Chain A: S.1 Chain B: H.41, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, D.187, R.188, Q.189, T.190, Q.192 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:N.142, B:M.165, B:E.166 Hydrogen bonds: B:G.143, B:H.164, B:E.166, B:R.188 Halogen bonds: B:T.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, L. et al., Resistance mechanisms of SARS-CoV-2 3CLpro to the non-covalent inhibitor WU-04. Cell Discov (2024)

Release Date

2024-06-05

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase nsp5

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