SMTL ID : 8k7r.1

Human Fc epsilon RI in complex with hIgE Fc (TMD disordered)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: G.44, N.46, V.81, N.82 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.2: 6 residues within 4Å: Chain A: P.37, W.38, F.129, N.158, H.159, N.160 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.38, A:P.37, A:W.38

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.3: 6 residues within 4Å: Chain A: N.67, F.85, E.86, S.88, G.89 Chain C: R.226 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.226

2 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.4: 13 residues within 4Å: Chain A: K.142, I.144 Chain B: Y.138, S.140, L.158, V.160, D.161, Q.191, N.193, T.195, T.197 Chain C: K.101, R.107 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:L.158, B:V.160, B:T.197 Hydrogen bonds: B:Y.138, C:K.101, B:S.140, B:S.140 NAG-NAG-BMA-MAN-MAN.5: 8 residues within 4Å: Chain C: D.70, Y.138, L.158, V.160, D.161, Q.191, N.193, T.195 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Y.138, C:Y.138

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 1 residues within 4Å: Chain A: N.191 No protein-ligand interaction detected (PLIP) NAG.7: 2 residues within 4Å: Chain A: T.164, N.165 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Human Fc epsilon RI in complex with hIgE Fc (TMD disordered). To Be Published

Release Date

2024-12-04

Peptides

High affinity immunoglobulin epsilon receptor subunit alpha: A
IgE Fc: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

C
F

High affinity immunoglobulin epsilon receptor subunit alpha

IgE Fc

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