SMTL ID : 8k7t.1

Mouse Fc epsilon RI in complex with mIgE Fc

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-1-2-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 7 residues within 4Å: Chain A: N.66, V.84, Q.85, S.87, G.88, N.106 Ligands: NAG-NAG-BMA.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.87 NAG-NAG-BMA.2: 7 residues within 4Å: Chain A: R.38, N.106, T.108, D.186, K.187, F.188 Ligands: NAG-NAG-BMA.1 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.3: 10 residues within 4Å: Chain A: I.143 Chain E: I.134, Y.136, I.138, L.156, V.158, D.159, H.188, N.190, T.192 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:Y.136 NAG-NAG-BMA-MAN-MAN.4: 14 residues within 4Å: Chain F: D.67, D.68, R.69, R.131, Y.136, I.138, L.156, V.158, D.159, K.186, H.188, N.190, T.192, S.194 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:R.69, F:Y.136

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 2 residues within 4Å: Chain A: N.73, S.74 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.73 NAG.6: 1 residues within 4Å: Chain A: N.167 No protein-ligand interaction detected (PLIP) NAG.7: 1 residues within 4Å: Chain A: N.152 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain E: N.165, N.167 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.165 NAG.9: 4 residues within 4Å: Chain E: T.45, Q.47, L.75, N.95 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:L.75 Hydrogen bonds: E:T.45, E:N.95 NAG.10: 5 residues within 4Å: Chain E: P.233 Chain F: T.45, Q.47, Q.77, N.95 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:T.45, F:Q.47 Hydrophobic interactions: E:P.233 NAG.11: 2 residues within 4Å: Chain F: N.167, T.169 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Mouse Fc epsilon RI in complex withMouse Fc epsilon RI in complex with mIgE Fc mIgE Fc. To Be Published

Release Date

2024-07-17

Peptides

High affinity immunoglobulin epsilon receptor subunit alpha: A
High affinity immunoglobulin epsilon receptor subunit gamma: BC
High affinity immunoglobulin epsilon receptor subunit beta: D
IgE Fc: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
G

C
H

D
B

E
E

F
F

Membrane

We predict this structure to be a membrane protein.
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High affinity immunoglobulin epsilon receptor subunit alpha

High affinity immunoglobulin epsilon receptor subunit gamma

High affinity immunoglobulin epsilon receptor subunit beta

IgE Fc

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