SMTL ID : 8k9l.1

Full agonist- and positive allosteric modulator-bound mu-type opioid receptor-G protein complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x TYR- DAL- GLY- MEA- ETA: DAMGO(Non-covalent)

TYR-DAL-GLY-MEA-ETA.1: 12 residues within 4Å: Chain A: Q.201, V.220, I.221, D.224, M.228, C.294, V.313, I.373, V.377, W.395, I.399, Y.403 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.220, A:I.221, A:V.313, A:W.395 Hydrogen bonds: A:D.224, A:Y.403

1 x VV9: (2~{S})-2-(3-bromanyl-4-methoxy-phenyl)-3-(4-chlorophenyl)sulfonyl-1,3-thiazolidine(Non-covalent)

VV9.2: 11 residues within 4Å: Chain A: W.233, C.236, T.237, V.240, D.241, F.255, I.264, N.268, F.316, M.320, P.321 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.240, A:V.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaneko, S. et al., Structural and dynamic insights into the activation of the mu-opioid receptor by an allosteric modulator. Nat Commun (2024)

Release Date

2024-05-29

Peptides

Soluble cytochrome b562,Mu-type opioid receptor,Mu-type opioid receptor: A
G protein subunit alpha i3: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D
scFv16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
A

C
B

D
G

E
H

Membrane

We predict this structure to be a membrane protein.
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Soluble cytochrome b562,Mu-type opioid receptor,Mu-type opioid receptor

G protein subunit alpha i3

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

scFv16

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