SMTL ID : 8k9r.1

Cryo EM structure of the products-bound PGAP1(Bst1)-H443N from Chaetomium thermophilum

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-mer
Ligands
2 x MAN: alpha-D-mannopyranose(Non-covalent)
1 x 05E: 2-azanylethyl [(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate(Non-covalent)
1 x PA1: 2-amino-2-deoxy-alpha-D-glucopyranose(Non-covalent)
1 x L9H: [(2~{R})-1-octadecoxy-3-[oxidanyl-[(2~{R},3~{R},5~{S},6~{R})-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-phosphoryl]oxy-propan-2-yl] octadecanoate(Non-covalent)
1 x PLM: PALMITIC ACID(Non-covalent)
1 x CLR: CHOLESTEROL(Non-covalent)
1 x 80Y: 2-azanylethyl [(2R,3S,4S,5S,6S)-3,4,5,6-tetrakis(oxidanyl)oxan-2-yl]methyl hydrogen phosphate(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Hong, J. et al., Molecular basis of the inositol deacylase PGAP1 involved in quality control of GPI-AP biogenesis. Nat Commun (2024)
Release Date
2023-12-20
Peptides
GPI inositol-deacylase,MCherry protein: A
Green fluorescent protein,Complement decay-accelerating factor: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Membrane
We predict this structure to be a membrane protein.

GPI inositol-deacylase,MCherry protein

Green fluorescent protein,Complement decay-accelerating factor

Related Entries With Identical Sequence

8k9t.1