SMTL ID : 8kae.1

16d-bound human SPNS2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x YUX: 3-[3-(4-decylphenyl)-1,2,4-oxadiazol-5-yl]propan-1-amine(Non-covalent)

YUX.1: 9 residues within 4Å: Chain E: Y.116, R.119, Y.120, T.329, L.332, G.333, I.336, E.433, H.468 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:Y.116, E:L.332, E:L.332, E:I.336 Hydrogen bonds: E:R.119, E:S.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Duan, Y. et al., Structural basis of Sphingosine-1-phosphate transport via human SPNS2. Cell Res. (2024)

Release Date

2024-01-03

Peptides

NbFab-H chain: A
anti-Fab nb: B
NbFab chain L: C
Tc-nb 8: D
Sphingosine-1-phosphate transporter SPNS2: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
K

C
L

D
N

E
R

Membrane

We predict this structure to be a membrane protein.
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NbFab-H chain

anti-Fab nb

NbFab chain L

Tc-nb 8

Sphingosine-1-phosphate transporter SPNS2

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