SMTL ID : 8kb4.1

Cryo-EM structure of human TMEM87A A308M

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 3 residues within 4Å: Chain A: N.79, S.122, L.124 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.124 Hydrogen bonds: A:N.79, A:S.122, A:S.122 NAG.2: 2 residues within 4Å: Chain A: Q.126, N.127 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.126, A:N.127 NAG.4: 1 residues within 4Å: Chain A: E.172 No protein-ligand interaction detected (PLIP)

1 x 65I: (9R,12R)-15-amino-12-hydroxy-6,12-dioxo-7,11,13-trioxa-12lambda~5~-phosphapentadecan-9-yl undecanoate(Non-covalent)

65I.3: 7 residues within 4Å: Chain A: R.305, F.364, I.365, L.367, D.371, I.419, R.427 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, H. et al., GolpHCat (TMEM87A), a unique voltage-dependent cation channel in Golgi apparatus, contributes to Golgi-pH maintenance and hippocampus-dependent memory. Nat Commun (2024)

Release Date

2024-07-10

Peptides

Transmembrane protein 87A,EGFP: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Transmembrane protein 87A,EGFP