SMTL ID : 8kb8.2 (1 other biounit)

Structure of the WDR91 WD40 domain complexed with Rab7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.27, T.45, D.68 Ligands: GTP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.27, A:T.45, H2O.1, H2O.1

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 23 residues within 4Å: Chain A: D.21, S.22, G.23, V.24, G.25, K.26, T.27, S.28, F.38, S.39, N.40, Y.42, A.44, T.45, G.71, N.130, K.131, D.133, L.134, S.160, A.161, K.162 Ligands: MG.1 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:G.23, A:G.25, A:K.26, A:T.27, A:S.28, A:S.28, A:S.39, A:N.40, A:T.45, A:T.69, A:G.71, A:N.130, A:K.131, A:K.131, A:S.160, A:A.161, A:K.162 Water bridges: A:K.26, A:K.26, A:T.27 Salt bridges: A:K.26, A:K.26, A:D.133 pi-Stacking: A:F.38, A:F.38 pi-Cation interactions: A:K.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, X. et al., Insights into the distinct membrane targeting mechanisms of WDR91 family proteins. Structure (2024)

Release Date

2024-08-07

Peptides

Ras-related protein Rab-7a: A
WD repeat-containing protein 91: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
B

Ras-related protein Rab-7a

WD repeat-containing protein 91

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