SMTL ID : 8kco.1

Cryo-EM structure of human gamma-secretase in complex with RO4929097

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-mer
Ligands
5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x NAG- NAG- BMA- BMA- BMA: beta-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x N60: 2,2-dimethyl-N-[(7S)-6-oxo-5,7-dihydrobenzo[d][1]benzazepin-7-yl]-N'-(2,2,3,3,3-pentafluoropropyl)propanediamide(Non-covalent)
2 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
3 x CLR: CHOLESTEROL(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Guo, X. et al., CryoEM structure of PS1-containing gamma-secretase in complex with MRK-560. To Be Published
Release Date
2024-08-14
Peptides
Nicastrin: A
Presenilin-1: B
Gamma-secretase subunit APH-1A: C
Gamma-secretase subunit PEN-2: D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
Membrane
We predict this structure to be a membrane protein.

Nicastrin

Presenilin-1

Gamma-secretase subunit APH-1A

Gamma-secretase subunit PEN-2

Related Entries With Identical Sequence

5a63.1 | 5fn2.1 | 5fn3.1 | 5fn4.1 | 5fn5.1 | 6idf.1 | 6iyc.1 | 6lqg.1 | 6lr4.1 | 7c9i.1 | 7d8x.1 | 7y5t.1 | 7y5x.1 | 7y5z.1 | 8im7.1 | 8k8e.1 | 8kcp.1 | 8kcs.1 | 8kct.1 | 8kcu.1 | 8oqy.1 | 8oqz.1 | 8x52.1 | 8x53.1 | 8x54.1