SMTL ID : 8kda.1

Cryo-EM structure of Hydrogenobacter thermophilus minimal protein-only RNase P (HARP) in complex with pre-tRNAs

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-12-mer

Ligands

5 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: D.140, D.144, D.162 Chain B: A.1, A.2 Ligands: MG.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.140, A:D.144, A:D.162 MG.2: 6 residues within 4Å: Chain A: E.51, S.141, D.144 Chain B: A.1, A.2 Ligands: MG.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.144 MG.3: 3 residues within 4Å: Chain C: A.1 Chain G: D.7, D.144 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:D.144 MG.4: 2 residues within 4Å: Chain H: E.143, D.144 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain L: E.51, S.141, D.144 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teramoto, T. et al., Cryo-EM structure of Hydrogenobacter thermophilus minimal protein-only RNase P (HARP) in complex with pre-tRNAs. To Be Published

Release Date

2024-08-14

Peptides

RNA-free ribonuclease P: AGHIJKLMNOPQ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

G
F

H
G

I
H

J
C

K
D

L
I

M
J

N
A

O
B

P
K

Q
L

RNA-free ribonuclease P