SMTL ID : 8kei.1

Cryo-EM structure of NADPH oxidase 2 in complex with p22phox and EROS

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 4 residues within 4Å: Chain B: A.232, N.235, T.237, V.238 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 2 residues within 4Å: Chain B: Q.143, N.144 No protein-ligand interaction detected (PLIP)

1 x POV: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate(Non-covalent)

POV.3: 7 residues within 4Å: Chain A: E.10, A.14, I.18 Chain B: A.108, I.182, T.189, K.190 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:A.14, A:I.18, B:A.108, B:I.182, B:I.182 Hydrogen bonds: B:K.190

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.4: 18 residues within 4Å: Chain B: A.52, L.55, N.56, S.107, H.110, T.111, H.114, A.170, G.174, I.177, T.178, L.214, H.217, G.218, A.219, R.221, I.222, V.223 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:A.52, B:L.55, B:T.111, B:I.177, B:I.177 Hydrogen bonds: B:A.219, B:A.219, B:R.221, B:I.222, B:V.223 Salt bridges: B:R.49 pi-Stacking: B:H.114 Metal complexes: B:H.110 HEM.5: 17 residues within 4Å: Chain B: V.1, I.62, L.93, H.96, K.97, A.100, W.101, L.181, I.184, S.188, R.193, F.200, H.204, F.207, F.211 Chain D: R.118, Y.119 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain D, Hydrophobic interactions: B:I.62, B:L.93, B:K.97, B:L.181, B:I.184, B:F.200, B:F.207, B:F.211 pi-Cation interactions: B:H.96 Metal complexes: B:H.96 Salt bridges: D:R.118

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 1 residues within 4Å: Chain B: N.127 No protein-ligand interaction detected (PLIP)

1 x LBN: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine(Non-covalent)

LBN.7: 10 residues within 4Å: Chain A: T.21, I.24, V.25 Chain B: K.39, L.40, G.42, S.43, I.112, F.116, W.120 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:I.112, B:I.112, B:F.116, A:V.25 Hydrogen bonds: B:S.43 pi-Cation interactions: B:W.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, S.Y. et al., Cryo-EM structure of NADPH oxidase 2 in complex with p22phox and EROS. To Be Published

Release Date

2024-05-22

Peptides

Cytochrome b-245 light chain: A
Cytochrome b-245 heavy chain: B
monoclonal antibody 7G5 heavy chain: C
Cytochrome b-245 chaperone 1: D
monoclonal antibody 7G5 light chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Membrane

We predict this structure to be a membrane protein.
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Cytochrome b-245 light chain

Cytochrome b-245 heavy chain

monoclonal antibody 7G5 heavy chain

Cytochrome b-245 chaperone 1

monoclonal antibody 7G5 light chain

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