SMTL ID : 8kf1.1

The cryo-EM structure of AV-45 bound type1 amyloid beta 42 fibril.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-12-mer

Ligands

2 x VW6: 4-[2-[6-[2-[2-(2-fluoranylethoxy)ethoxy]ethoxy]pyridin-3-yl]ethyl]-~{N}-methyl-aniline(Non-covalent)

VW6.1: 21 residues within 4Å: Chain A: Q.686, L.688 Chain B: G.708, G.709 Chain C: Q.686, K.687 Chain D: G.708, G.709 Chain E: Q.686 Chain F: G.708, G.709 Chain G: Q.686, K.687, L.688 Chain H: G.708, G.709 Chain I: Q.686 Chain J: G.708, G.709 Chain K: Q.686 Chain L: G.708 10 PLIP interactions: 1 interactions with chain B, 3 interactions with chain G, 3 interactions with chain A, 1 interactions with chain D, 1 interactions with chain F, 1 interactions with chain J Hydrogen bonds: B:G.709, D:G.709, F:G.709, J:G.709 Hydrophobic interactions: G:Q.686, G:Q.686, G:L.688, A:Q.686, A:Q.686, A:L.688 VW6.2: 19 residues within 4Å: Chain A: G.708, G.709 Chain B: Q.686, L.688 Chain C: G.708, G.709 Chain D: Q.686, K.687 Chain E: G.708 Chain F: Q.686 Chain G: G.708, G.709 Chain H: Q.686, K.687, L.688 Chain I: G.708, G.709 Chain J: Q.686 Chain L: Q.686 9 PLIP interactions: 1 interactions with chain G, 3 interactions with chain B, 3 interactions with chain H, 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: G:G.709, A:G.709, C:G.709 Hydrophobic interactions: B:Q.686, B:Q.686, B:L.688, H:Q.686, H:Q.686, H:L.688

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Q.Y. et al., The cryo-EM structure of AV-45 bound type1 amyloid beta 42 fibril. To Be Published

Release Date

2024-08-21

Peptides

P3(40): ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
F

C
H

D
A

E
I

F
B

G
J

H
C

I
K

J
D

K
L

L
E

P3(40)

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