SMTL ID : 8kfh.2 (1 other biounit)

Crystal structure of sperm whale myoglobin reconstituted with manganese porphycene

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

monomer

Ligands

1 x HNN: PORPHYCENE CONTAINING MN(Non-covalent)

HNN.1: 15 residues within 4Å: Chain A: L.49, K.59, F.60, R.62, T.84, V.85, A.88, L.106, S.109, H.110, H.114, I.116, Y.120, L.121, F.155 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:L.49, A:F.60, A:F.60, A:T.84, A:V.85, A:A.88, A:L.106, A:L.106, A:I.116, A:I.116, A:Y.120, A:L.121, A:F.155 Hydrogen bonds: A:S.109 Salt bridges: A:R.62, A:H.81, A:H.114 Metal complexes: A:H.110

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: K.33, H.136, N.139 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.139 Salt bridges: A:K.33, A:H.136 SO4.3: 5 residues within 4Å: Chain A: K.17, G.97, H.98, H.99, E.100 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.98, A:H.99, A:E.100 Water bridges: A:K.95, A:A.101 Salt bridges: A:K.17, A:H.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oohora, K. et al., Rational Design of an Artificial Ethylbenzene Hydroxylase Using Molecular Dynamics Simulation to Enhance the Enantioselectivity. To Be Published

Release Date

2024-08-21

Peptides

Myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Myoglobin

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