SMTL ID : 8kfj.1 (1 other biounit)

Crystal structure of sperm whale myoglobin (F46L/H64A mutant) reconstituted with manganese porphycene

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x HNN: PORPHYCENE CONTAINING MN(Non-covalent)

HNN.1: 16 residues within 4Å: Chain A: L.49, T.56, K.59, F.60, R.62, T.84, V.85, A.88, L.106, S.109, H.110, H.114, I.116, L.121, I.124, F.155 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:L.49, A:F.60, A:F.60, A:F.60, A:T.84, A:V.85, A:A.88, A:L.106, A:L.106, A:L.121, A:I.124, A:F.155 Hydrogen bonds: A:S.109 Salt bridges: A:R.62, A:H.110, A:H.114 Metal complexes: A:H.110

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: K.17, H.98 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.17, A:H.98 SO4.3: 3 residues within 4Å: Chain A: K.33, H.136, N.139 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.139 Water bridges: A:G.138 Salt bridges: A:K.33, A:H.136 SO4.4: 4 residues within 4Å: Chain A: Y.13, Q.15, S.20, E.21 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.13, A:Q.15, A:E.21 SO4.5: 3 residues within 4Å: Chain A: S.20, G.22, E.23 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.20, A:G.22 SO4.6: 2 residues within 4Å: Chain A: K.17, V.18 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.18 SO4.7: 2 residues within 4Å: Chain A: H.130, S.134 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.48, A:S.134 Salt bridges: A:H.130

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 3 residues within 4Å: Chain A: G.141, D.143, A.144 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oohora, K. et al., Rational Design of an Artificial Ethylbenzene Hydroxylase Using Molecular Dynamics Simulation to Enhance the Enantioselectivity. To Be Published

Release Date

2024-08-21

Peptides

Myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myoglobin

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