SMTL ID : 8kga.1

SlNDPS1-AtcPT4 Chimera

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

homo-dimer

Ligands

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 5 residues within 4Å: Chain A: F.86, A.87, S.89, N.92 Ligands: MLI.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.89 PEG.5: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.217 PEG.6: 6 residues within 4Å: Chain B: F.86, A.87, F.88, S.89, N.92, R.211 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.89, B:N.92, B:N.92, B:R.211

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: K.77, L.78, G.79 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.77 EDO.3: 1 residues within 4Å: Chain A: R.47 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.47 EDO.7: 3 residues within 4Å: Chain B: A.143, L.144, E.147 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.147, B:E.147

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.4: 8 residues within 4Å: Chain A: M.43, D.44, G.45, N.46, R.47, H.61, R.95 Ligands: PEG.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:M.43, A:D.44, A:D.44, A:G.45, A:N.46, A:N.46, A:R.47 Salt bridges: A:R.47, A:R.47, A:H.61, A:H.61, A:R.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suenaga-Hiromori, M. et al., Biosynthesising various rubber-like polymers by reconstituting prenyltransferases on Hevea rubber particles: molecular and structural bases of the versatile system. To Be Published

Release Date

2024-08-21

Peptides

Dimethylallylcistransferase CPT1, chloroplastic,Dehydrodolichyl diphosphate synthase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dimethylallylcistransferase CPT1, chloroplastic,Dehydrodolichyl diphosphate synthase 2

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