SMTL ID : 8kh9.1

Crystal structure of FGFR4(V550M) kinase domain with 8z

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: R.30 Ligands: VVW.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.30, A:R.30

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.163, T.193, N.195, R.197 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.193, A:T.193, A:N.195 Water bridges: A:N.104, A:R.163, A:R.197 Salt bridges: A:R.163

1 x VVW: 1-[4-[(1~{R})-1-[3,5-bis(chloranyl)pyridin-4-yl]ethoxy]-5-cyano-pyridin-2-yl]-3-[6-methanoyl-5-[(4-methyl-2-oxidanylidene-piperazin-1-yl)methyl]-3-(2-morpholin-4-ylethoxy)pyridin-2-yl]urea(Covalent)

VVW.3: 19 residues within 4Å: Chain A: L.20, G.21, V.28, R.30, T.46, A.48, I.81, M.97, E.98, C.99, A.100, A.101, K.102, G.103, N.104, R.163, L.166, D.177 Ligands: EDO.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.20, A:V.28 Hydrogen bonds: A:R.30, A:A.100, A:G.103, A:N.104 Water bridges: A:A.101, A:R.112 Halogen bonds: A:L.20, A:D.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, F. et al., Discovery of 6-Formylpyridyl Urea Derivatives as Potent Reversible-Covalent Fibroblast Growth Factor Receptor 4 Inhibitors with Improved Anti-Hepatocellular Carcinoma Activity. J.Med.Chem. (2024)

Release Date

2024-07-31

Peptides

Fibroblast growth factor receptor 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fibroblast growth factor receptor 4