SMTL ID : 8khd.1

The interface structure of Omicron RBD binding to 5817 Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain C: D.10, N.14, L.42 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.10, C:D.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Identification of a broad sarbecovirus neutralizing antibody targeting a conserved epitope on the receptor-binding domain. Cell Rep (2024)

Release Date

2024-04-17

Peptides

Heavy chain of 5817: A
Light chain of 5817: B
Spike protein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
J

C
C

Heavy chain of 5817

Light chain of 5817

Spike protein S1

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