SMTL ID : 8kht.1

The structure of Rv0097 with substrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x FE2: FE (II) ION(Non-covalent)

FE2.1: 4 residues within 4Å: Chain A: H.113, D.115, H.276, R.291 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.113, A:D.115, A:H.276, H2O.3, H2O.4, H2O.4 FE2.3: 4 residues within 4Å: Chain B: H.113, D.115, H.276, R.291 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.113, B:D.115, B:H.276, H2O.6, H2O.8, H2O.8

2 x VY9: (3R)-3-(2-hydroxy-2-oxoethylamino)decanoic acid(Non-covalent)

VY9.2: 13 residues within 4Å: Chain A: Y.81, Y.86, T.108, G.109, F.111, D.115, Y.116, F.118, P.169, H.172, K.174, G.220, R.291 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.86, A:F.111, A:F.111, A:F.118, A:F.118, A:P.169 Hydrogen bonds: A:Y.81, A:Y.86, A:G.109, A:Y.116 Water bridges: A:A.110 Salt bridges: A:K.174, A:R.291 VY9.4: 14 residues within 4Å: Chain B: Y.81, Y.86, F.95, T.108, G.109, F.111, D.115, Y.116, F.118, P.169, H.172, K.174, G.220, R.291 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:Y.86, B:F.95, B:F.111, B:F.111, B:F.118, B:F.118, B:P.169, B:H.172 Hydrogen bonds: B:Y.81, B:Y.86, B:G.109, B:Y.116 Salt bridges: B:K.174, B:R.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, T.Y. et al., Variation in biosynthesis and metal-binding properties of isonitrile-containing peptides produced by Mycobacteria versus Streptomyces. Acs Catalysis (2024)

Release Date

2024-04-17

Peptides

Oxidoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Oxidoreductase