SMTL ID : 8of5.1

Crystal structure of Aurora A 122-403 C290A, N332A, Q335A, C393A bound to ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 21 residues within 4Å: Chain A: L.21, G.22, K.23, G.24, K.25, F.26, G.27, V.29, A.42, K.44, L.76, L.92, E.93, A.95, T.99, E.142, N.143, L.145, D.156 Ligands: MG.7, MG.8 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:F.26, A:G.27, A:E.93, A:A.95, A:D.156 Water bridges: A:K.23, A:K.25, A:K.44, A:T.99, A:E.142, A:E.142, A:E.142, A:N.143, A:D.156 Salt bridges: A:K.44, A:K.44 ADP.10: 21 residues within 4Å: Chain B: L.21, G.22, K.23, G.24, K.25, F.26, G.27, V.29, A.42, K.44, L.76, L.92, E.93, A.95, T.99, E.142, N.143, L.145, D.156 Ligands: MG.16, MG.17 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:F.26, B:G.27, B:E.93, B:A.95, B:D.156 Water bridges: B:K.23, B:K.25, B:K.44, B:T.99, B:T.99, B:E.142, B:E.142, B:E.142, B:E.142, B:E.142, B:N.143, B:D.156, B:D.156 Salt bridges: B:K.44, B:K.44

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 9 residues within 4Å: Chain A: E.65, I.66, H.69, L.70, Y.128, K.132, V.134, H.162, S.165 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.69, A:Y.128 Salt bridges: A:K.132 EPE.11: 9 residues within 4Å: Chain B: E.65, I.66, H.69, L.70, Y.128, K.132, V.134, H.162, S.165 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.69 Salt bridges: B:K.132

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: E.203, G.207, K.208, P.209, E.212 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.203, A:G.207 GOL.4: 1 residues within 4Å: Chain A: R.87 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.87 GOL.12: 5 residues within 4Å: Chain B: E.203, G.207, K.208, P.209, E.212 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Water bridges: A:Y.177, A:Y.177 Hydrogen bonds: B:G.207 GOL.13: 1 residues within 4Å: Chain B: R.87 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.87

2 x MPO: 3[N-MORPHOLINO]PROPANE SULFONIC ACID(Non-covalent)

MPO.5: 6 residues within 4Å: Chain A: L.60, R.61, V.64, E.65, Y.81, V.88 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.81 Hydrogen bonds: A:E.65 MPO.14: 6 residues within 4Å: Chain B: L.60, R.61, V.64, E.65, Y.81, V.88 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Y.81

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.6: 3 residues within 4Å: Chain A: W.10, F.39, L.41 No protein-ligand interaction detected (PLIP) NO3.15: 3 residues within 4Å: Chain B: W.10, F.39, L.41 No protein-ligand interaction detected (PLIP)

6 x MG: MAGNESIUM ION(Non-covalent)

MG.7: 3 residues within 4Å: Chain A: N.143, D.156 Ligands: ADP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.156, H2O.3, H2O.4 MG.8: 3 residues within 4Å: Chain A: D.156 Ligands: ADP.1, MG.9 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.156, A:D.156, H2O.1, H2O.2, H2O.3 MG.9: 2 residues within 4Å: Chain A: W.159 Ligands: MG.8 No protein-ligand interaction detected (PLIP) MG.16: 3 residues within 4Å: Chain B: N.143, D.156 Ligands: ADP.10 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.156, H2O.8, H2O.9 MG.17: 3 residues within 4Å: Chain B: D.156 Ligands: ADP.10, MG.18 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.156, B:D.156, H2O.6, H2O.7, H2O.8 MG.18: 2 residues within 4Å: Chain B: W.159 Ligands: MG.17 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miles, J.A. et al., Crystal structure of Aurora A 122-403 C290A, N332A, Q335A, C393A bound to ADP. To Be Published

Release Date

2024-03-27

Peptides

Aurora kinase A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Aurora kinase A