SMTL ID : 8ofb.1

Crystal Structure of T. maritima reverse gyrase with a minimal latch, hexagonal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

monomer

Ligands

1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.1: 8 residues within 4Å: Chain A: R.25, G.26, W.61, L.624, P.625, S.626, T.627, R.628 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.11, C.14, C.29, C.32 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.14, A:C.29, A:C.32 ZN.3: 4 residues within 4Å: Chain A: C.560, C.563, C.574, C.577 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.560, A:C.563, A:C.574, A:C.577

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: R.665, R.669, F.673 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.665, A:R.669 SO4.5: 1 residues within 4Å: Chain A: R.682 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.682 SO4.6: 4 residues within 4Å: Chain A: H.530, E.611, R.792, K.963 5 PLIP interactions: 5 interactions with chain A Water bridges: A:D.607, A:G.612 Salt bridges: A:H.530, A:R.792, A:K.963 SO4.7: 2 residues within 4Å: Chain A: T.808, R.811 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.808 Salt bridges: A:K.438, A:R.811 SO4.8: 1 residues within 4Å: Chain A: R.807 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.807

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 2 residues within 4Å: Chain A: R.957, S.959 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain A: S.799, L.800 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mhaindarkar, V.P. et al., Structure of reverse gyrase with a minimal latch that supports ATP-dependent positive supercoiling without specific interactions with the topoisomerase domain. Acta Crystallogr D Struct Biol (2023)

Release Date

2023-04-26

Peptides

Reverse gyrase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Reverse gyrase

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