SMTL ID : 8ofd.1

Crystal structure of beta-conglutin from Lupinus albus refined to 2.81 A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

homo-trimer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: L.17, Y.18, D.132, Y.134 Chain B: E.310 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.17, A:Y.18 Hydrogen bonds: A:D.132, A:Y.134 ACT.4: 5 residues within 4Å: Chain B: L.17, Y.18, D.132, Y.134 Chain C: E.310 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.17, B:Y.18 Hydrogen bonds: B:D.132, B:Y.134 ACT.7: 5 residues within 4Å: Chain A: E.310 Chain C: L.17, Y.18, D.132, Y.134 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:L.17, C:Y.18 Hydrogen bonds: C:D.132, C:Y.134

3 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Chain C: N.158 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.158 NA.5: 1 residues within 4Å: Chain A: N.158 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.158 NA.8: 1 residues within 4Å: Chain B: N.158 No protein-ligand interaction detected (PLIP)

3 x K: POTASSIUM ION(Non-covalent)

K.3: 3 residues within 4Å: Chain A: H.272, N.274, R.355 No protein-ligand interaction detected (PLIP) K.6: 3 residues within 4Å: Chain B: H.272, N.274, R.355 No protein-ligand interaction detected (PLIP) K.9: 3 residues within 4Å: Chain C: H.272, N.274, R.355 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dolot, R.M. et al., First crystal structure of beta-conglutin, a major lupin allergen from Lupinus albus seeds. To Be Published

Release Date

2023-06-14

Peptides

Conglutin beta 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Conglutin beta 1