SMTL ID : 8ofg.1

Streptococcus pneumoniae CdaA in complex with c-di-amp

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

1 x GLU- ARG- LEU- LEU- GLY- GLY- TRP- LYS: GLU-ARG-LEU-LEU-GLY-GLY-TRP-LYS(Non-covalent)

GLU-ARG-LEU-LEU-GLY-GLY-TRP-LYS.1: 8 residues within 4Å: Chain A: K.23, Y.27, R.31, E.62, I.65 Chain B: N.71, T.72, P.73 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.27, A:Y.27, A:I.65, B:P.73, B:P.73 Hydrogen bonds: A:R.31 Salt bridges: A:K.23

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 11 residues within 4Å: Chain A: L.36, D.76, G.77, A.91, Y.92, L.93, L.95, T.107, R.108, A.111 Ligands: MG.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.76, A:G.77, A:L.93, A:L.93, A:T.107, A:R.108 Water bridges: A:T.107

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.3: 1 residues within 4Å: Ligands: AMP.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garbers, T.B. et al., Streptococcus pneumoniae CdaA in complex with c-di-amp. To Be Published

Release Date

2023-06-21

Peptides

Diadenylate cyclase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Diadenylate cyclase

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