SMTL ID : 8og0.1

Crystal structure of MJF14-6-4-2 Fab fragment in complex with epitope peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TYR- GLU- PRO- GLU- ALA: Alpha-synuclein(Non-covalent)

TYR-GLU-PRO-GLU-ALA.1: 11 residues within 4Å: Chain A: Y.29, Y.33, P.94 Chain B: N.32, W.34, Y.53, S.57, S.59, Y.61, A.102, Y.103 17 PLIP interactions: 11 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:W.34, B:Y.53, B:Y.53, A:Y.29, A:Y.29, A:P.94 Hydrogen bonds: B:S.57, B:S.57, B:S.59, B:Y.103, A:Y.29 Water bridges: B:R.100, B:R.100, B:R.100, A:K.30, A:Y.33 Salt bridges: B:R.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lieknina, I. et al., Structural basis of epitope recognition by anti-alpha-synuclein antibodies MJFR14-6-4-2. NPJ Parkinsons Dis (2024)

Release Date

2024-03-27

Peptides

Fab fragment light chain: A
Fab fragment heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

Fab fragment light chain

Fab fragment heavy chain