SMTL ID : 8og1.1

Exostosin-like 3 apo enzyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 8 residues within 4Å: Chain A: T.163, P.516, R.560, Y.561, N.564, L.585 Chain B: F.467, S.471 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.516, A:Y.561 Hydrogen bonds: A:R.560 NAG-NAG-BMA.3: 8 residues within 4Å: Chain A: F.467, S.471 Chain B: T.163, P.516, R.560, Y.561, N.564, L.585 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:P.516, B:Y.561 Hydrogen bonds: B:R.560

2 x NAG- NAG- BMA- MAN- NAG- MAN: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN.2: 13 residues within 4Å: Chain A: D.751, H.754, S.756, W.757, L.758, N.760, S.761, N.762, F.845, H.846, H.849, N.853 Chain B: A.615 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.751, A:H.754 NAG-NAG-BMA-MAN-NAG-MAN.4: 13 residues within 4Å: Chain A: A.615 Chain B: D.751, H.754, S.756, W.757, L.758, N.760, S.761, N.762, F.845, H.846, H.849, N.853 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.751, B:H.754

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sammon, D. et al., Molecular mechanism of decision-making in glycosaminoglycan biosynthesis. Nat Commun (2023)

Release Date

2023-07-12

Peptides

Exostosin-like 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Exostosin-like 3

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