- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x HEB: HEME B/C(Covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 8 residues within 4Å:- Chain A: T.10, R.12, L.20, A.23, S.24, N.25, Q.26
- Ligands: FLC.12
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.10, A:T.10, A:N.25, A:Q.26
GOL.5: 4 residues within 4Å:- Chain A: E.35, F.44, R.52, N.53
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.52, A:R.52, A:N.53, A:N.53
- Water bridges: A:N.53
GOL.11: 6 residues within 4Å:- Chain B: Q.282, D.283, N.345, D.347, L.348, K.351
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:N.345, B:K.351
- Water bridges: B:D.347, A:I.67
GOL.15: 14 residues within 4Å:- Chain B: D.102, L.104, P.108, C.109, C.120, F.121, L.122, A.123, T.126, R.127, S.128, T.129, E.130, F.254
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:F.121, B:F.121, B:F.121, B:S.128, B:T.129
- Water bridges: B:S.128, B:S.128
GOL.18: 7 residues within 4Å:- Chain B: R.74, L.75, A.86, P.100, F.101, L.122
- Ligands: ACT.10
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.74, B:R.74
GOL.19: 4 residues within 4Å:- Chain B: S.70, L.73, R.74, R.78
2 PLIP interactions:2 interactions with chain B- Water bridges: B:R.78, B:R.78
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 8 residues within 4Å:- Chain A: F.70, P.71, N.72, L.75
- Chain B: P.229, V.287, D.288
- Ligands: CL.14
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Water bridges: A:F.70, A:N.72
- Hydrogen bonds: B:D.288, B:D.288
EDO.8: 11 residues within 4Å:- Chain A: F.98, S.99, P.100, E.101
- Chain B: S.37, A.38, R.312
- Ligands: HEB.2, EDO.20, FLC.21, ACT.22
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:S.37, A:E.101
EDO.16: 5 residues within 4Å:- Chain A: D.4, K.16
- Chain B: Y.204, R.399, K.404
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.399, B:K.404
- Water bridges: B:R.399
EDO.17: 6 residues within 4Å:- Chain B: G.190, K.191, A.192, R.193, P.375, G.376
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.191, B:A.192
- Water bridges: B:G.190, B:R.193
EDO.20: 11 residues within 4Å:- Chain A: F.98, S.99
- Chain B: S.37, R.127, T.217, R.221, R.312, H.316
- Ligands: HEB.2, EDO.8, FLC.21
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:R.221
- Water bridges: B:R.127, A:S.99
- 3 x FLC: CITRATE ANION(Non-covalent)
FLC.6: 6 residues within 4Å:- Chain A: T.8, I.9, T.10, R.12
- Chain B: V.69
- Ligands: FLC.12
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:I.9
- Water bridges: A:T.10, A:R.12, A:R.12
- Hydrophobic interactions: B:V.69
FLC.12: 7 residues within 4Å:- Chain A: T.10, N.25
- Chain B: E.68, V.69, S.70
- Ligands: GOL.3, FLC.6
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:V.69
- Hydrogen bonds: B:E.68, B:E.68, B:E.68, B:V.69, B:S.70, B:S.70
FLC.21: 11 residues within 4Å:- Chain A: F.98, E.101
- Chain B: R.127, E.130, F.254, F.295, R.299
- Ligands: HEB.2, EDO.8, EDO.20, ACT.22
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:F.295
- Water bridges: B:R.299, B:R.299
- Salt bridges: B:R.299
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.10: 7 residues within 4Å:- Chain B: I.87, N.88, Q.89, R.90, P.100, F.101
- Ligands: GOL.18
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:F.101
- Hydrogen bonds: B:Q.89, B:F.101
ACT.22: 10 residues within 4Å:- Chain A: E.101
- Chain B: L.294, F.295, R.299, L.303, L.308, R.312
- Ligands: HEB.2, EDO.8, FLC.21
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.303
- Water bridges: B:R.312
- Salt bridges: B:R.312
- 1 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pfanzagl, V. et al., Posttranslational modification and heme cavity architecture of human eosinophil peroxidase-insights from first crystal structure and biochemical characterization. J.Biol.Chem. (2023)
- Release Date
- 2024-01-24
- Peptides
- Eosinophil peroxidase light chain: A
Eosinophil peroxidase heavy chain: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x HEB: HEME B/C(Covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x FLC: CITRATE ANION(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 1 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pfanzagl, V. et al., Posttranslational modification and heme cavity architecture of human eosinophil peroxidase-insights from first crystal structure and biochemical characterization. J.Biol.Chem. (2023)
- Release Date
- 2024-01-24
- Peptides
- Eosinophil peroxidase light chain: A
Eosinophil peroxidase heavy chain: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B