SMTL ID : 8ohx.1

Crystal structure of Beta-glucuronidase from Escherichia coli in complex with siastatin B derived inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x VON: (3~{S},4~{S},5~{S},6~{R})-4,5,6-tris(oxidanyl)piperidine-3-carboxylic acid

VON.1: 12 residues within 4Å: Chain A: D.165, H.332, N.414, E.415, N.468, Y.470, Y.474, E.506, W.551, R.564, N.568, K.570 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:H.332, A:N.414, A:E.415, A:N.468, A:Y.474, A:E.506, A:N.568 Water bridges: A:D.165, A:D.165, A:H.332, A:E.415 Salt bridges: A:R.564, A:K.570 VON.2: 12 residues within 4Å: Chain B: D.165, H.332, N.414, E.415, N.468, Y.470, Y.474, E.506, W.551, R.564, N.568, K.570 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:D.165, B:H.332, B:N.414, B:E.415, B:N.468, B:Y.474, B:E.506, B:W.551, B:N.568 Water bridges: B:H.332 Salt bridges: B:R.564, B:K.570

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y. et al., Molecular Basis for Inhibition of Heparanases and beta-Glucuronidases by Siastatin B. J.Am.Chem.Soc. (2024)

Release Date

2024-01-10

Peptides

Beta-D-glucuronidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

Beta-D-glucuronidase

Related Entries With Identical Sequence