SMTL ID : 8oik.2 (1 other biounit)

D-PHAT domain (NTD) of human SAMD4A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

homo-dimer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: N.42, C.44, E.45 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.42 EDO.3: 3 residues within 4Å: Chain B: N.42, C.44, E.45 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.42 Water bridges: B:E.45

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 3 residues within 4Å: Chain A: W.37 Chain B: Q.30 Ligands: PEG.4 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.30 PEG.4: 3 residues within 4Å: Chain A: Q.30 Chain B: W.37 Ligands: PEG.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kubikova, J. et al., Structural basis for binding of Drosophila Smaug to the GPCR Smoothened and to the germline inducer Oskar. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-04-05

Peptides

Protein Smaug homolog 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Protein Smaug homolog 1

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