SMTL ID : 8ojf.1

Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 with bound phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.04 Å

Oligo State

homo-tetramer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: R.186, R.187, S.188, K.234 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.187, A:S.188 Salt bridges: A:R.186, A:K.234 PO4.2: 8 residues within 4Å: Chain A: P.663, P.664, D.665, T.666, I.667, N.668, H.704, G.705 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.665, A:T.666, A:T.666, A:I.667, A:N.668 Salt bridges: A:H.704 PO4.5: 4 residues within 4Å: Chain B: R.186, R.187, S.188, K.234 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.187, B:S.188 Salt bridges: B:R.186, B:K.234 PO4.6: 4 residues within 4Å: Chain C: R.186, R.187, S.188, K.234 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.187, C:S.188 Salt bridges: C:R.186, C:K.234 PO4.7: 8 residues within 4Å: Chain C: P.663, P.664, D.665, T.666, I.667, N.668, H.704, G.705 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:D.665, C:T.666, C:T.666, C:I.667, C:N.668 Salt bridges: C:H.704 PO4.10: 4 residues within 4Å: Chain D: R.186, R.187, S.188, K.234 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:R.187, D:S.188 Salt bridges: D:R.186, D:K.234

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: R.235, N.946, I.960 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: R.593 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain C: R.235, N.946, I.960 Ligand excluded by PLIP CL.9: 1 residues within 4Å: Chain C: R.593 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meyer, T.J. et al., Amino acid changes that deregulate PHOSPHOENOLPYRUVATE CARBOXYLASE in plants. To Be Published

Release Date

2023-05-31

Peptides

Phosphoenolpyruvate carboxylase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Phosphoenolpyruvate carboxylase 1

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