SMTL ID : 8ojw.1

Streptavidin WT artificial metalloenzyme for carboamination

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

homo-tetramer

Ligands

4 x 0OD: trichloro{(1,2,3,4,5-eta)-1,2,3,4-tetramethyl-5-[2-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)ethyl]cyclopentadienyl}rhodium(1+)(Non-covalent)

0OD.1: 21 residues within 4Å: Chain A: N.11, L.13, S.15, Y.31, S.33, V.35, G.36, N.37, A.38, W.67, A.74, S.76, T.78, W.80, W.96, L.98, S.100, L.112, D.116 Chain C: W.108, K.109 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.67, A:W.67, A:W.67, A:L.98 Hydrogen bonds: A:N.11, A:S.15, A:S.33, A:N.37, A:S.76, A:S.76, A:D.116 0OD.5: 21 residues within 4Å: Chain B: N.11, L.13, S.15, Y.31, S.33, V.35, G.36, N.37, A.38, W.67, A.74, S.76, T.78, W.80, W.96, L.98, S.100, L.112, D.116 Chain D: W.108, K.109 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:W.67, B:W.67, B:W.67, B:L.98 Hydrogen bonds: B:N.11, B:S.15, B:S.33, B:N.37, B:S.76, B:S.76, B:D.116 0OD.9: 21 residues within 4Å: Chain A: W.108, K.109 Chain C: N.11, L.13, S.15, Y.31, S.33, V.35, G.36, N.37, A.38, W.67, A.74, S.76, T.78, W.80, W.96, L.98, S.100, L.112, D.116 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:W.67, C:W.67, C:W.67, C:L.98 Hydrogen bonds: C:N.11, C:S.15, C:S.33, C:N.37, C:S.76, C:S.76, C:D.116 0OD.13: 21 residues within 4Å: Chain B: W.108, K.109 Chain D: N.11, L.13, S.15, Y.31, S.33, V.35, G.36, N.37, A.38, W.67, A.74, S.76, T.78, W.80, W.96, L.98, S.100, L.112, D.116 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:W.67, D:W.67, D:W.67, D:L.98 Hydrogen bonds: D:N.11, D:S.15, D:S.33, D:N.37, D:S.76, D:S.76, D:D.116

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: H.115 Chain B: H.115 Ligands: CL.6 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: H.115 Chain B: H.115 Ligands: CL.2 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain C: H.115 Chain D: H.115 Ligands: CL.14 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain C: H.115 Chain D: H.115 Ligands: CL.10 Ligand excluded by PLIP

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: K.68, N.69, N.70 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.70 Water bridges: A:K.68, A:N.70 Salt bridges: A:K.68 SO4.4: 5 residues within 4Å: Chain A: T.30, R.41, Y.42, V.43, N.69 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.41 Water bridges: A:R.41, A:N.69 SO4.7: 3 residues within 4Å: Chain B: K.68, N.69, N.70 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.70 Water bridges: B:K.68, B:N.70 Salt bridges: B:K.68 SO4.8: 5 residues within 4Å: Chain B: T.30, R.41, Y.42, V.43, N.69 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.41 Water bridges: B:R.41, B:N.69 SO4.11: 3 residues within 4Å: Chain C: K.68, N.69, N.70 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.70 Water bridges: C:K.68, C:N.70 Salt bridges: C:K.68 SO4.12: 5 residues within 4Å: Chain C: T.30, R.41, Y.42, V.43, N.69 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.41 Water bridges: C:R.41, C:N.69 SO4.15: 3 residues within 4Å: Chain D: K.68, N.69, N.70 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.70 Water bridges: D:K.68, D:N.70 Salt bridges: D:K.68 SO4.16: 5 residues within 4Å: Chain D: T.30, R.41, Y.42, V.43, N.69 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.41 Water bridges: D:R.41, D:N.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Igareta, N.V., Streptavidin WT artificial metalloenzyme for carboamination. To Be Published

Release Date

2024-04-03

Peptides

Streptavidin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Streptavidin