SMTL ID : 8ojy.1 (1 other biounit)

Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 T778 mutant with bound malate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-tetramer

Ligands

4 x LMR: (2S)-2-hydroxybutanedioic acid(Non-covalent)

LMR.1: 10 residues within 4Å: Chain A: R.650, G.651, P.654, Q.682, M.834, K.838, L.890, R.897, Q.971, N.972 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.651, A:G.651, A:Q.682, A:R.893, A:N.972 Salt bridges: A:R.650, A:K.838, A:R.897 LMR.5: 10 residues within 4Å: Chain B: R.650, G.651, P.654, Q.682, M.834, K.838, L.890, R.897, Q.971, N.972 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.651, B:G.651, B:Q.682, B:N.972, B:N.972 Salt bridges: B:R.650, B:K.838, B:R.897 LMR.10: 10 residues within 4Å: Chain C: R.650, G.651, P.654, Q.682, M.834, K.838, L.890, R.897, Q.971, N.972 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:G.651, C:G.651, C:Q.682, C:R.893, C:N.972 Salt bridges: C:R.650, C:K.838, C:R.897 LMR.14: 10 residues within 4Å: Chain D: R.650, G.651, P.654, Q.682, M.834, K.838, L.890, R.897, Q.971, N.972 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:G.651, D:G.651, D:Q.682, D:N.972, D:N.972 Salt bridges: D:R.650, D:K.838, D:R.897

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.245 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain B: Q.241, R.245 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain C: R.245 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain D: Q.241, R.245 Ligand excluded by PLIP

10 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 2 residues within 4Å: Chain A: R.264, D.441 No protein-ligand interaction detected (PLIP) PEG.4: 4 residues within 4Å: Chain A: L.203, Y.204, K.213, D.217 No protein-ligand interaction detected (PLIP) PEG.7: 4 residues within 4Å: Chain B: N.324, Q.325, D.328 Ligands: PEG.8 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:N.324 PEG.8: 3 residues within 4Å: Chain A: N.324 Chain B: N.324 Ligands: PEG.7 No protein-ligand interaction detected (PLIP) PEG.9: 4 residues within 4Å: Chain B: L.203, Y.204, K.213, D.217 No protein-ligand interaction detected (PLIP) PEG.12: 2 residues within 4Å: Chain C: R.264, D.441 No protein-ligand interaction detected (PLIP) PEG.13: 4 residues within 4Å: Chain C: L.203, Y.204, K.213, D.217 No protein-ligand interaction detected (PLIP) PEG.16: 4 residues within 4Å: Chain D: N.324, Q.325, D.328 Ligands: PEG.17 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:N.324 PEG.17: 3 residues within 4Å: Chain C: N.324 Chain D: N.324 Ligands: PEG.16 No protein-ligand interaction detected (PLIP) PEG.18: 4 residues within 4Å: Chain D: L.203, Y.204, K.213, D.217 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meyer, T.J. et al., Amino acid changes that deregulate PHOSPHOENOLPYRUVATE CARBOXYLASE in plants. To Be Published

Release Date

2024-04-03

Peptides

Phosphoenolpyruvate carboxylase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Phosphoenolpyruvate carboxylase 1

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