- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 5 x PMS: phenylmethanesulfonic acid(Covalent)(Non-covalent)
PMS.2: 9 residues within 4Å:- Chain A: Y.127, Y.129, F.179
- Chain B: W.106, F.107, G.151, M.155, H.162
- Ligands: FAD.5
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:Y.127, A:Y.127, A:F.179, B:F.107
- pi-Stacking: B:W.106
PMS.6: 8 residues within 4Å:- Chain A: W.106, G.151, Y.156, H.162
- Chain B: Y.127, Y.129, F.179
- Ligands: FAD.1
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:Y.127, B:F.179, B:F.179
- pi-Stacking: A:W.106
PMS.10: 10 residues within 4Å:- Chain C: Y.127, Y.129, F.179
- Chain D: W.106, F.107, G.150, G.151, Y.156, H.162
- Ligands: FAD.14
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:Y.127, C:F.179, C:F.179, D:F.107
- pi-Stacking: D:W.106
PMS.13: 8 residues within 4Å:- Chain C: G.150, G.151, M.155, Y.156, H.162
- Chain D: Y.129
- Ligands: FAD.9, PMS.15
5 PLIP interactions:2 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: D:Y.129
- Hydrogen bonds: D:Y.129, C:G.151, C:Y.156
- Salt bridges: C:H.162
PMS.15: 7 residues within 4Å:- Chain C: W.106, F.107
- Chain D: P.69, Y.127, F.179
- Ligands: FAD.9, PMS.13
7 PLIP interactions:3 interactions with chain C, 4 interactions with chain D- Hydrophobic interactions: C:F.107, C:F.107, D:Y.127, D:F.179, D:F.179
- pi-Stacking: C:W.106
- Hydrogen bonds: D:Y.127
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 3 residues within 4Å:- Chain A: K.142, W.216, E.218
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.142, A:K.142, A:E.218
GOL.7: 8 residues within 4Å:- Chain A: I.51, F.66, Y.68
- Chain B: H.12, S.13, Y.43, Q.105
- Ligands: FAD.5
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:S.13, B:S.13
- Water bridges: B:A.11, A:Y.68, A:Y.68
GOL.11: 8 residues within 4Å:- Chain C: H.12, S.13, Y.43
- Chain D: I.51, S.52, F.66, Y.68
- Ligands: FAD.9
5 PLIP interactions:1 interactions with chain D, 4 interactions with chain C- Water bridges: D:Y.68, C:Q.105, C:Q.105
- Hydrogen bonds: C:S.13, C:S.13
GOL.16: 4 residues within 4Å:- Chain D: Y.222, P.225, L.228, E.247
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Y.222, D:E.247
GOL.17: 9 residues within 4Å:- Chain C: I.51, F.66, Y.68
- Chain D: H.12, S.13, E.14, Y.43, Q.105
- Ligands: FAD.14
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:S.13, D:S.13
- Water bridges: D:A.11, D:Y.43, D:Q.105, C:Y.68
GOL.18: 4 residues within 4Å:- Chain A: N.46
- Chain D: Y.43, A.44, N.46
5 PLIP interactions:1 interactions with chain B, 2 interactions with chain D, 2 interactions with chain A- Water bridges: B:N.48
- Hydrogen bonds: D:N.46, D:N.46, A:N.46, A:N.46
- 3 x ACE: ACETYL GROUP(Non-functional Binders)
ACE.4: 2 residues within 4Å:- Chain A: R.201
- Ligands: FAD.1
No protein-ligand interaction detected (PLIP)ACE.8: 2 residues within 4Å:- Chain B: K.33, G.34
No protein-ligand interaction detected (PLIP)ACE.12: 4 residues within 4Å:- Chain C: Q.244, E.247, K.248, L.260
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:E.247, C:L.260
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Grieco, A. et al., Structural dynamics at the active site of the cancer-associated flavoenzyme NQO1 probed by chemical modification with PMSF. Febs Lett. (2023)
- Release Date
- 2023-11-01
- Peptides
- NAD(P)H dehydrogenase [quinone] 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
DC
BD
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 5 x PMS: phenylmethanesulfonic acid(Covalent)(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 3 x ACE: ACETYL GROUP(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Grieco, A. et al., Structural dynamics at the active site of the cancer-associated flavoenzyme NQO1 probed by chemical modification with PMSF. Febs Lett. (2023)
- Release Date
- 2023-11-01
- Peptides
- NAD(P)H dehydrogenase [quinone] 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
DC
BD
C