SMTL ID : 8oka.1

Human Mitochondrial Lon Y394F Mutant ADP Bound

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 21 residues within 4Å: Chain A: D.400, H.401, Y.402, M.404, P.434, P.435, G.436, V.437, G.438, K.439, T.440, S.441, R.444, Y.571, I.579, Y.583, L.584, Q.587, V.619, R.620, Q.623 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:H.401, A:Y.402, A:P.434, A:G.436, A:V.437, A:V.437, A:G.438, A:K.439, A:T.440, A:T.440, A:S.441, A:S.441, A:S.441, A:Y.571, A:Y.571, A:Q.587 Salt bridges: A:K.439, A:R.620 pi-Cation interactions: A:H.401 ADP.2: 18 residues within 4Å: Chain B: D.400, H.401, Y.402, M.404, P.435, G.436, V.437, G.438, K.439, T.440, S.441, Y.571, I.579, Y.583, L.584, V.619, R.620, Q.623 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:H.401, B:Y.402, B:G.436, B:V.437, B:G.438, B:K.439, B:T.440, B:S.441, B:S.441, B:S.441, B:Y.571, B:Y.571, B:Q.623 Salt bridges: B:K.439, B:R.620, B:R.620 pi-Cation interactions: B:H.401 ADP.3: 20 residues within 4Å: Chain C: D.400, H.401, Y.402, G.403, M.404, P.435, G.436, V.437, G.438, K.439, T.440, S.441, Y.571, I.579, Y.583, L.584, Q.587, V.619, R.620, Q.623 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:H.401, C:Y.402, C:G.436, C:V.437, C:G.438, C:K.439, C:T.440, C:T.440, C:S.441, C:S.441, C:Y.571, C:Y.571, C:R.620 Salt bridges: C:K.439, C:R.620 ADP.4: 19 residues within 4Å: Chain D: D.400, H.401, Y.402, M.404, P.435, G.436, V.437, G.438, K.439, T.440, S.441, Y.571, I.579, Y.583, L.584, Q.587, V.619, R.620, Q.623 19 PLIP interactions: 19 interactions with chain D Hydrogen bonds: D:H.401, D:Y.402, D:P.434, D:G.436, D:V.437, D:G.438, D:K.439, D:T.440, D:T.440, D:S.441, D:S.441, D:S.441, D:S.441, D:Y.571, D:Y.571, D:Q.623 Salt bridges: D:K.439, D:R.620 pi-Stacking: D:H.401 ADP.5: 17 residues within 4Å: Chain E: D.400, H.401, Y.402, M.404, P.435, G.436, V.437, G.438, K.439, T.440, S.441, Y.571, I.579, Y.583, L.584, V.619, R.620 16 PLIP interactions: 16 interactions with chain E Hydrogen bonds: E:H.401, E:Y.402, E:G.436, E:V.437, E:G.438, E:K.439, E:T.440, E:T.440, E:S.441, E:Y.571, E:Y.571 Salt bridges: E:K.439, E:K.439, E:R.620, E:R.620 pi-Stacking: E:H.401 ADP.6: 19 residues within 4Å: Chain F: D.400, H.401, Y.402, M.404, P.434, P.435, G.436, V.437, G.438, K.439, T.440, S.441, Y.571, I.579, Y.583, L.584, Q.587, V.619, R.620 17 PLIP interactions: 17 interactions with chain F Hydrogen bonds: F:Y.402, F:Y.402, F:P.434, F:G.436, F:V.437, F:G.438, F:K.439, F:T.440, F:T.440, F:S.441, F:Q.587, F:Q.587, F:Q.587 Salt bridges: F:K.439, F:R.620, F:R.620 pi-Stacking: F:H.401

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kunova, N. et al., Polyphosphate and tyrosine phosphorylation in the N-terminal domain of the human mitochondrial Lon protease disrupts its functions. Sci Rep (2024)

Release Date

2024-04-10

Peptides

Lon protease homolog, mitochondrial: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Lon protease homolog, mitochondrial