SMTL ID : 8okf.1

WD repeat containing protein 5 (WDR5)- PER2 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

2 x 144: TRIS-HYDROXYMETHYL-METHYL-AMMONIUM(Non-covalent)

144.1: 9 residues within 4Å: Chain A: S.270, S.271, S.312, D.313, F.354, S.396, C.482, F.484, I.526 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.354, A:F.484 Water bridges: A:C.482 Salt bridges: A:D.313 144.2: 3 residues within 4Å: Chain A: E.372, S.392, D.393 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:E.372, A:D.393

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain A: S.439, A.453, N.478, Y.481, C.482, I.483 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: K.299, F.300 Ligand excluded by PLIP

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.5: 11 residues within 4Å: Chain A: A.268, S.270, A.286, G.310, I.311, S.312, D.328, Y.352, F.354, F.370, L.542 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.312, A:D.328, A:D.328

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wolf, E. et al., A structural competition involving WDR5 times circadian oscillations. To Be Published

Release Date

2024-04-10

Peptides

Glutathione S-transferase class-mu 26 kDa isozyme,WD repeat domain 5: A
PER2 peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione S-transferase class-mu 26 kDa isozyme,WD repeat domain 5

PER2 peptide