SMTL ID : 8om7.1

Human Mitochondrial Lon Y186E Mutant ADP Bound

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: H.401, Y.402, M.404, P.435, G.436, V.437, G.438, K.439, T.440, S.441, Y.571, I.579, Y.583, L.584, Q.587, V.619, R.620, Q.623 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:H.401, A:Y.402, A:Y.402, A:G.436, A:V.437, A:G.438, A:K.439, A:T.440, A:T.440, A:T.440, A:S.441, A:Q.587, A:R.620, A:Q.623 Salt bridges: A:K.439 ADP.2: 18 residues within 4Å: Chain B: H.401, Y.402, M.404, P.435, G.436, V.437, G.438, K.439, T.440, S.441, R.444, Y.571, I.579, Y.583, L.584, V.619, R.620, Q.623 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:H.401, B:Y.402, B:Y.402, B:G.436, B:V.437, B:G.438, B:K.439, B:T.440, B:T.440, B:T.440, B:T.440 Salt bridges: B:R.620, B:R.620 pi-Cation interactions: B:H.401 ADP.3: 19 residues within 4Å: Chain C: H.401, Y.402, M.404, P.434, P.435, G.436, V.437, G.438, K.439, T.440, S.441, Y.571, I.579, Y.583, L.584, Q.587, V.619, R.620, Q.623 19 PLIP interactions: 19 interactions with chain C Hydrogen bonds: C:H.401, C:Y.402, C:P.434, C:G.436, C:V.437, C:V.437, C:G.438, C:K.439, C:T.440, C:S.441, C:S.441, C:Y.571, C:Y.571, C:Q.587, C:Q.623 Salt bridges: C:K.439, C:R.620, C:R.620 pi-Stacking: C:H.401 ADP.4: 16 residues within 4Å: Chain D: H.401, Y.402, P.435, G.436, V.437, G.438, K.439, T.440, S.441, Y.571, I.579, Y.583, L.584, V.619, R.620, Q.623 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:H.401, D:Y.402, D:Y.402, D:G.436, D:G.438, D:K.439, D:T.440, D:S.441, D:S.441, D:R.620 Salt bridges: D:K.439, D:K.439, D:R.620, D:R.620 ADP.5: 20 residues within 4Å: Chain E: D.400, H.401, Y.402, M.404, P.435, G.436, V.437, G.438, K.439, T.440, S.441, Y.571, K.576, I.579, Y.583, L.584, Q.587, V.619, R.620, Q.623 11 PLIP interactions: 11 interactions with chain E Hydrogen bonds: E:H.401, E:G.436, E:V.437, E:G.438, E:K.439, E:T.440, E:S.441, E:Y.571, E:Y.571 Salt bridges: E:K.439, E:K.439 ADP.6: 17 residues within 4Å: Chain F: H.401, Y.402, M.404, P.435, G.436, V.437, G.438, K.439, T.440, S.441, Y.571, I.579, Y.583, L.584, V.619, R.620, Q.623 14 PLIP interactions: 14 interactions with chain F Hydrogen bonds: F:Y.402, F:G.436, F:G.438, F:K.439, F:T.440, F:S.441, F:S.441, F:S.441, F:S.441, F:Y.571, F:Y.571 Salt bridges: F:K.439 pi-Cation interactions: F:H.401, F:H.401

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kunova, N. et al., Polyphosphate and tyrosine phosphorylation in the N-terminal domain of the human mitochondrial Lon protease disrupts its functions. Sci Rep (2024)

Release Date

2024-04-10

Peptides

Lon protease homolog, mitochondrial: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Lon protease homolog, mitochondrial