SMTL ID : 8oma.1

MutSbeta bound to 61bp homoduplex DNA

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 3.29 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 22 residues within 4Å: Chain C: I.648, F.650, I.651, P.670, N.671, M.672, G.673, G.674, K.675, S.676, T.677, D.748, H.783, Y.815 Chain D: D.943, I.945, G.948, R.949, S.950, T.951, F.952, G.980 20 PLIP interactions: 16 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:I.651, C:I.651, C:N.653, C:M.672, C:G.674, C:K.675, C:S.676, C:S.676, C:T.677, C:T.677, C:D.748, D:G.948, D:R.949, D:F.952, D:G.980 Salt bridges: C:K.675, C:K.675, C:H.783 pi-Stacking: C:Y.815, C:Y.815 ATP.2: 24 residues within 4Å: Chain C: D.716, G.721, S.723, T.724, F.725, G.753 Chain D: I.867, L.871, D.875, Y.877, V.878, N.880, P.897, N.898, G.900, G.901, K.902, S.903, S.904, D.975, E.976, H.1010, Y.1057 Ligands: MG.3 17 PLIP interactions: 13 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:V.878, D:N.880, D:N.898, D:K.902, D:S.903, D:S.904, D:S.904, D:E.976, D:E.976, C:D.716, C:S.723, C:T.724, C:F.725 Salt bridges: D:K.902, D:K.902, D:H.1010 pi-Stacking: D:Y.1057

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain C: T.724 Chain D: S.903, D.975 Ligands: ATP.2 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:S.903

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, J.-H. et al., MutSbeta bound to 61bp homoduplex DNA. To Be Published

Release Date

2023-05-24

Peptides

DNA mismatch repair protein Msh2: C
DNA mismatch repair protein Msh3: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

DNA mismatch repair protein Msh2

DNA mismatch repair protein Msh3

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