SMTL ID : 8on8.1

Apo Malacoceros FaNaC1 in lipid nanodiscs

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.181, R.184 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain A: H.298, G.299, N.300, E.398, F.403 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain B: N.181, R.184 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 5 residues within 4Å: Chain B: H.298, G.299, N.300, E.398, F.403 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 2 residues within 4Å: Chain C: N.181, R.184 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 5 residues within 4Å: Chain C: H.298, G.299, N.300, E.398, F.403 No protein-ligand interaction detected (PLIP)

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 4 residues within 4Å: Chain A: K.389, N.393, T.395, A.396 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.389 NAG.8: 3 residues within 4Å: Chain A: E.442, N.445, Y.453 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.445, A:Y.453 NAG.9: 3 residues within 4Å: Chain A: K.458, N.461, S.463 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.461, A:S.463, A:S.463 NAG.10: 4 residues within 4Å: Chain B: K.389, N.393, T.395, A.396 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.389 NAG.11: 3 residues within 4Å: Chain B: E.442, N.445, Y.453 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.445, B:Y.453 NAG.12: 3 residues within 4Å: Chain B: K.458, N.461, S.463 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.461, B:S.463, B:S.463 NAG.13: 4 residues within 4Å: Chain C: K.389, N.393, T.395, A.396 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.389 NAG.14: 3 residues within 4Å: Chain C: E.442, N.445, Y.453 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.445, C:Y.453 NAG.15: 3 residues within 4Å: Chain C: K.458, N.461, S.463 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.461, C:S.463, C:S.463

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kalienkova, V. et al., Structural basis for excitatory neuropeptide signaling. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-02-14

Peptides

FMRFamide-gated sodium channel 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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FMRFamide-gated sodium channel 1

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