SMTL ID : 8oo3.1

X-ray structure of the adduct formed upon reaction of cisplatin with human angiogenin after 5 days soaking

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: V.78, T.80, K.82, T.97, G.99, F.120, R.122 Ligands: TAR.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.80, A:T.80, A:K.82, A:K.82

1 x NH3: AMMONIA(Non-covalent)

NH3.2: 3 residues within 4Å: Chain A: V.113, H.114 Ligands: PT.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.113

1 x PT: PLATINUM (II) ION(Non-covalent)

PT.3: 2 residues within 4Å: Chain A: H.114 Ligands: NH3.2 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.114, H2O.1, H2O.3

1 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.4: 5 residues within 4Å: Chain A: G.99, F.100, R.101, R.122 Ligands: GOL.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.100 Salt bridges: A:R.101, A:R.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferraro, G. et al., Cisplatin binding to angiogenin protein: new molecular pathways and targets for the drug's anticancer activity. Dalton Trans (2023)

Release Date

2023-07-12

Peptides

Angiogenin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Angiogenin

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