SMTL ID : 8ooy.1

Pol I bound to extended and displaced DNA section - open conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x DC- DG- DA- DC- DG- DT- DT: Displacing Primer(Non-covalent)

DC-DG-DA-DC-DG-DT-DT.1: 10 residues within 4Å: Chain A: R.457, G.509, A.510 Chain B: A.1, A.2, C.3, G.4, T.5, C.6, G.7 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.447 Hydrogen bonds: A:S.445, A:G.448, A:R.451, A:Q.452, A:R.457 Salt bridges: A:R.517, A:R.517 pi-Stacking: A:F.447, A:F.447

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.31, Q.95 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Botto, M.M. et al., A four-point molecular handover during Okazaki maturation. Nat.Struct.Mol.Biol. (2023)

Release Date

2023-08-09

Peptides

DNA polymerase I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase I

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