SMTL ID : 8op1.1

Subsection of a helical nucleocapsid of the Respiratory Syncytial Virus

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-pentamer

Ligands

5 x C- C- C- C- C- C- C: RNA (5'-R(P*CP*CP*CP*CP*CP*CP*C)-3')(Non-covalent)

C-C-C-C-C-C-C.1: 27 residues within 4Å: Chain A: K.169, A.171, A.172, R.183, R.184, N.248, G.253, Q.254, V.255, H.301, S.312, T.314, I.332, G.334, E.335, Y.336, R.337, G.338 Chain D: R.184, N.187, V.188, I.241, G.244, N.248 Ligands: C-C-C-C-C-C-C.2, C-C-C-C-C-C-C.2, C-C-C-C-C-C-C.4 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.2: 29 residues within 4Å: Chain A: R.184, N.187, V.188, I.241, G.244, N.248 Chain B: K.169, A.171, A.172, A.180, R.183, R.184, N.248, G.253, Q.254, V.255, H.301, S.312, T.314, I.332, M.333, G.334, E.335, Y.336, R.337, G.338 Ligands: C-C-C-C-C-C-C.1, C-C-C-C-C-C-C.3, C-C-C-C-C-C-C.3 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.3: 25 residues within 4Å: Chain B: R.184, N.187, V.188, I.241, G.244, N.248 Chain C: K.169, A.171, A.172, R.183, N.248, G.253, Q.254, V.255, W.259, H.301, S.309, S.312, T.314, I.332, G.334, E.335, Y.336, R.337 Ligands: C-C-C-C-C-C-C.2 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.4: 29 residues within 4Å: Chain D: K.169, A.171, A.172, A.180, R.183, R.184, N.248, G.253, Q.254, V.255, H.301, S.309, S.312, T.314, I.332, M.333, G.334, E.335, Y.336, R.337, G.338 Chain E: R.184, N.187, V.188, I.241, G.244 Ligands: C-C-C-C-C-C-C.1, C-C-C-C-C-C-C.1, C-C-C-C-C-C-C.5 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.5: 22 residues within 4Å: Chain D: R.341 Chain E: K.169, A.171, A.172, A.180, R.183, R.184, N.248, G.253, Q.254, V.255, W.259, H.301, S.312, T.314, I.332, G.334, E.335, Y.336, R.337, G.338 Ligands: C-C-C-C-C-C-C.4 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gonnin, L. et al., Structural landscape of the respiratory syncytial virus nucleocapsids. Nat Commun (2023)

Release Date

2023-09-27

Peptides

Nucleoprotein: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Nucleoprotein