SMTL ID : 8oq3.1

Structure of methylamine treated human complement C3

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 4 residues within 4Å: Chain C: T.19, N.63, L.479, A.481 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 4 residues within 4Å: Chain A: T.19, N.63, L.479, A.481 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.480, A:K.480

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain A: E.149, N.178, R.915, N.917, M.1325 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.915 NAG.4: 5 residues within 4Å: Chain C: E.149, N.178, N.917, T.919, V.1323 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:V.1323 Hydrogen bonds: C:N.178, C:N.917

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gadeberg, T.A.F. et al., Structure of methylamine treated human complement C3. To Be Published

Release Date

2024-02-21

Peptides

Complement C3: AC
nanobody hC3Nb1 with mutation: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
D

B
C

D
F

Complement C3

nanobody hC3Nb1 with mutation