SMTL ID : 8orc.1

Mus Musculus Acetylcholinesterase in complex with AL237

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x VY8: 1-[2-(dimethylamino)ethyl]-3-(2-methoxyphenyl)thiourea

VY8.1: 19 residues within 4Å: Chain A: D.74, W.86, G.120, G.121, G.122, Y.124, S.125, Y.133, E.202, S.203, W.286, F.297, Y.337, F.338, Y.341, H.447, G.448, Y.449 Ligands: TOE.6 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.337, A:Y.337 Hydrogen bonds: A:Y.124 Water bridges: A:Y.337, A:Y.337 pi-Stacking: A:W.86, A:W.86, A:H.447 pi-Cation interactions: A:Y.341 VY8.8: 17 residues within 4Å: Chain B: W.86, G.120, G.121, G.122, Y.124, S.125, Y.133, E.202, S.203, W.286, F.297, Y.337, F.338, Y.341, H.447, G.448, Y.449 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.337, B:Y.337 Water bridges: B:Y.337 pi-Stacking: B:W.86, B:W.86, B:H.447 pi-Cation interactions: B:Y.341

4 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.2: 7 residues within 4Å: Chain A: Q.413, G.416, R.417, A.420, T.505, N.533, R.534 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.413, A:R.417, A:R.534 PG0.9: 6 residues within 4Å: Chain B: A.241, V.303, D.304, G.305, S.309, D.310 No protein-ligand interaction detected (PLIP) PG0.10: 7 residues within 4Å: Chain B: R.11, V.12, R.13, E.185, N.186, A.188, A.189 No protein-ligand interaction detected (PLIP) PG0.11: 8 residues within 4Å: Chain A: Q.527 Chain B: H.381, Y.382, T.383, D.384, H.393, T.528 Ligands: 7PG.7 1 PLIP interactions: 1 interactions with chain B Water bridges: B:W.385

5 x MXE: 2-METHOXYETHANOL(Non-covalent)

MXE.3: 6 residues within 4Å: Chain A: W.56, S.57, G.58, V.59, L.60, D.61 No protein-ligand interaction detected (PLIP) MXE.4: 5 residues within 4Å: Chain A: V.303, D.304, G.305, S.309, D.310 No protein-ligand interaction detected (PLIP) MXE.12: 6 residues within 4Å: Chain B: D.333, R.395, D.396, L.441, W.442, G.444 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.333 MXE.13: 6 residues within 4Å: Chain B: T.112, P.113, E.142, G.143, A.144, R.485 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.142, B:R.485, B:R.485 MXE.14: 5 residues within 4Å: Chain B: R.224, Q.325, R.485, T.486, G.487 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.325

2 x TOE: 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL(Non-covalent)

TOE.5: 11 residues within 4Å: Chain A: H.381, Y.382, T.383, D.384, H.393, D.396, A.397, A.400, T.528 Chain B: Q.527 Ligands: 7PG.7 No protein-ligand interaction detected (PLIP) TOE.6: 8 residues within 4Å: Chain A: Y.72, D.74, T.75, L.76, Y.124, W.286, Y.341 Ligands: VY8.1 No protein-ligand interaction detected (PLIP)

1 x 7PG: 2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL(Non-covalent)

7PG.7: 20 residues within 4Å: Chain A: A.377, L.380, H.381, W.385, Q.527, T.528, A.530, F.531, F.535 Chain B: A.377, L.380, H.381, W.385, Q.527, T.528, A.530, F.531, F.535 Ligands: TOE.5, PG0.11 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:H.381, A:Q.527, B:H.381

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumari, R. et al., Enzyme Dynamics Determine the Potency and Selectivity of Inhibitors Targeting Disease-Transmitting Mosquitoes. Acs Infect Dis. (2024)

Release Date

2024-04-24

Peptides

Acetylcholinesterase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Acetylcholinesterase

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