SMTL ID : 8osc.1

Structure of Homo sapiens 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 (DNPH1) bound to deoxyuridine 5'- monophosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

homo-dimer

Ligands

1 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)

UMP.1: 16 residues within 4Å: Chain A: S.111, A.112, M.113 Chain B: C.9, G.10, S.11, I.12, R.13, G.14, I.59, D.63, S.81, L.82, G.83, V.84, E.87 15 PLIP interactions: 12 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:I.12, B:I.59 Hydrogen bonds: B:G.10, B:I.12, B:R.13, B:R.13, B:G.14, B:S.81, B:G.83, B:V.84, A:S.111, A:A.112, A:M.113 Water bridges: B:L.82, B:L.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Devi, S. et al., Human 2'-Deoxynucleoside 5'-Phosphate N -Hydrolase 1: Mechanism of 2'-Deoxyuridine 5'-Monophosphate Hydrolysis. Biochemistry (2023)

Release Date

2023-08-30

Peptides

2'-deoxynucleoside 5'-phosphate N-hydrolase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

2'-deoxynucleoside 5'-phosphate N-hydrolase 1

Related Entries With Identical Sequence