- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-mer
- Ligands
- 9 x NA: SODIUM ION(Non-functional Binders)
- 3 x ALA: ALANINE(Non-covalent)
ALA.4: 10 residues within 4Å:- Chain A: S.351, S.352, S.353, M.387, A.429, G.430, I.431, D.464, T.468, N.471
5 PLIP interactions:1 Ligand-Ligand interactions, 4 interactions with chain A- Hydrogen bonds: A.4, A:S.353, A:I.431, A:D.464, A:N.471
ALA.9: 10 residues within 4Å:- Chain B: S.351, S.352, S.353, M.387, A.429, G.430, I.431, D.464, T.468, N.471
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Ligand interactions- Hydrogen bonds: B:S.353, B:I.431, B:D.464, B:N.471, A.9
ALA.14: 10 residues within 4Å:- Chain C: S.351, S.352, S.353, M.387, A.429, G.430, I.431, D.464, T.468, N.471
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Ligand interactions- Hydrogen bonds: C:S.353, C:I.431, C:D.464, C:N.471, A.14
- 3 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)
Y01.5: 10 residues within 4Å:- Chain A: I.191, F.192, V.236, V.240, V.243, R.246, K.247, I.415, V.419
- Chain B: W.272
11 PLIP interactions:9 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:I.191, A:F.192, A:V.236, A:V.240, A:V.243, A:V.243, A:I.415, A:V.419, B:W.272, B:W.272
- Salt bridges: A:R.246
Y01.10: 8 residues within 4Å:- Chain B: I.191, V.236, V.240, V.243, R.246, K.247, I.415
- Chain C: W.272
10 PLIP interactions:8 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:I.191, B:V.236, B:V.240, B:V.243, B:V.243, B:I.415, C:W.272, C:W.272
- Salt bridges: B:R.246, B:K.247
Y01.15: 12 residues within 4Å:- Chain A: W.272
- Chain C: L.187, I.191, F.192, L.232, V.236, V.240, V.243, R.246, K.247, I.415, V.419
14 PLIP interactions:12 interactions with chain C, 2 interactions with chain A- Hydrophobic interactions: C:L.187, C:F.192, C:L.232, C:V.236, C:V.240, C:V.243, C:V.243, C:I.415, C:V.419, A:W.272, A:W.272
- Hydrogen bonds: C:V.243
- Salt bridges: C:R.246, C:K.247
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Khare, S. et al., Receptor-recognition and antiviral mechanisms of retrovirus-derived human proteins. Nat.Struct.Mol.Biol. (2024)
- Release Date
- 2024-05-01
- Peptides
- Neutral amino acid transporter B(0): ABC
Nanobody 469: DEF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-mer
- Ligands
- 9 x NA: SODIUM ION(Non-functional Binders)
- 3 x ALA: ALANINE(Non-covalent)
- 3 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Khare, S. et al., Receptor-recognition and antiviral mechanisms of retrovirus-derived human proteins. Nat.Struct.Mol.Biol. (2024)
- Release Date
- 2024-05-01
- Peptides
- Neutral amino acid transporter B(0): ABC
Nanobody 469: DEF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F - Membrane
-
We predict this structure to be a membrane protein.