SMTL ID : 8ox6.1

Cryo-EM structure of ATP8B1-CDC50A in E1P conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 8 residues within 4Å: Chain A: W.371 Chain B: N.184, V.238, N.239, L.241, N.302, Y.303, P.304 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:W.371 Hydrogen bonds: B:N.239

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: D.454, T.456, D.893, D.897, E.914 Ligands: ALF.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.454, A:T.456, A:D.893, A:D.893, A:E.914

1 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)

ALF.3: 9 residues within 4Å: Chain A: D.454, T.456, L.731, T.732, K.873, N.896, D.897, E.914 Ligands: MG.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.454, A:D.454

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain B: N.111 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.111 NAG.5: 3 residues within 4Å: Chain B: F.107, T.109, N.298 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dieudonne, T. et al., Activation and substrate specificity of the human P4-ATPase ATP8B1. Nat Commun (2023)

Release Date

2023-11-29

Peptides

Phospholipid-transporting ATPase IC: A
Cell cycle control protein 50A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Phospholipid-transporting ATPase IC

Cell cycle control protein 50A

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