SMTL ID : 8oxz.1

Rat alpha5beta1 integrin, headpiece

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 6 residues within 4Å: Chain A: G.109, S.110, K.134, N.136, L.143, Q.144 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.109, A:N.136, A:Q.144 NAG.2: 2 residues within 4Å: Chain A: R.120, N.231 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.120, A:N.231 NAG.3: 2 residues within 4Å: Chain A: N.346, Y.349 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.346 NAG.4: 4 residues within 4Å: Chain A: N.356, G.357, S.358, D.359 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.335, A:G.357, A:S.358 NAG.5: 4 residues within 4Å: Chain A: Y.351, S.362, L.363, N.365 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.351 Hydrogen bonds: A:Y.351, A:S.362, A:L.363 NAG.6: 2 residues within 4Å: Chain B: N.269, T.452 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.269 NAG.7: 2 residues within 4Å: Chain B: D.157, N.363 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain B: G.404, N.406 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:N.406 Hydrogen bonds: B:G.404

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shafaq-Zadah, M. et al., Dynamic N-glycan rearrangement nucleates galectin-3 oligomers to determine endocytic fate. To Be Published

Release Date

2024-11-13

Peptides

Integrin subunit alpha 5: A
Integrin beta-1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
Q

Integrin subunit alpha 5

Integrin beta-1