SMTL ID : 8oyg.1

Crystal structure of ASBTNM in complex with pantoate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 8 residues within 4Å: Chain A: Q.77, M.81, G.110, E.260, V.261, G.262, M.263, Q.264 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.77, A:V.261 Water bridges: A:G.111 NA.2: 6 residues within 4Å: Chain A: S.114, N.115, S.128, V.129, T.132, E.260 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.260 Water bridges: A:E.260

1 x PAF: PANTOATE(Non-covalent)

PAF.3: 14 residues within 4Å: Chain A: L.44, I.47, G.111, T.112, A.113, I.203, Q.264, N.265, S.266, G.267, L.268, S.291, H.294, N.295 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.47, A:I.203 Hydrogen bonds: A:T.112, A:A.113, A:N.265, A:S.266, A:G.267, A:S.291, A:H.294, A:N.295 Salt bridges: A:H.294

1 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.4: 7 residues within 4Å: Chain A: I.75, F.78, A.79, L.142, I.146, M.149, L.150 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.78

2 x CD: CADMIUM ION(Non-covalent)

CD.5: 4 residues within 4Å: Chain A: H.181, G.185, S.186, T.188 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.181, H2O.1, H2O.1 CD.6: 2 residues within 4Å: Chain A: K.65, H.66 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.66, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Becker, P. et al., Mechanism of substrate binding and transport in BASS transporters. Biorxiv (2023)

Release Date

2023-07-12

Peptides

Transporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Transporter

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